Information for motif22


Reverse Opposite:

p-value:1e-13
log p-value:-3.135e+01
Information Content per bp:1.663
Number of Target Sequences with motif401.0
Percentage of Target Sequences with motif14.25%
Number of Background Sequences with motif347.2
Percentage of Background Sequences with motif9.77%
Average Position of motif in Targets391.0 +/- 371.2bp
Average Position of motif in Background407.4 +/- 417.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CACTCCAGCCTS
RSCACTYRAG----

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CACTCCAGCCTS
AATCGCACTGCATTCCG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CACTCCAGCCTS
AASCACTCAA-----

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACTCCAGCCTS
AGCCACTCAAG----

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CACTCCAGCCTS
TAAGCCACTTGAAATT-

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CACTCCAGCCTS
TAAGCCACTTGAAATT-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CACTCCAGCCTS
----BCAGACWA

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CACTCCAGCCTS
NCCACTTAN-----

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CACTCCAGCCTS-
-ACCACATCCTGT

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CACTCCAGCCTS
TAAGCCACTTAACATT-