Information for motif28


Reverse Opposite:

p-value:1e-10
log p-value:-2.424e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets454.2 +/- 437.8bp
Average Position of motif in Background470.8 +/- 173.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TAAGCCCG
TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TAAGCCCG
GCTAATCC--

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------TAAGCCCG--
GNNAGCTAATCCCCCN

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TAAGCCCG----
NNTAATCCNGNCNN

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------TAAGCCCG---
GANNATTAATCCCTNNN

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TAAGCCCG---
GNNNATTAATCCCTNCN

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TAAGCCCG----
NNNATTAATCCGNTTNA

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TAAGCCCG----
NTTGTTAATCCCTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TAAGCCCG---
NANANTTAATCCCNNNN

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAAGCCCG----
AAGCATACGCCCAACTT