Information for motif31


Reverse Opposite:

p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.530
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets447.5 +/- 345.2bp
Average Position of motif in Background391.3 +/- 326.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GATTACGATG
TTGCCCGGATTAGG---

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATTACGATG
GGATTAGC---

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GATTACGATG
NGGGATTA-----

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GATTACGATG
NNCTNAATTATGANN

MA0030.1_FOXF2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GATTACGATG-
NTTGTTTACGTTNN

GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GATTACGATG--
NNAGATNVNWATCTN

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GATTACGATG---
NNNATTTTACGACNNTN

PH0044.1_Homez/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GATTACGATG----
NNTAAAAACGATGTTNT

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GATTACGATG---
TATAATTATAATATTC

PB0108.1_Atf1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GATTACGATG---
GAATGACGAATAAC