Information for motif33


Reverse Opposite:

p-value:1e-8
log p-value:-1.904e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets466.3 +/- 317.5bp
Average Position of motif in Background420.4 +/- 196.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTCAGACG---
-CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTCAGACG-
-CCAGACAG

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GTCAGACG
AGGTGHCAGACA

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GTCAGACG-----
CAAATCCAGACATCACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGACG-
AGGTGNCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTCAGACG-
-BCAGACWA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGACG
ATGCCAGACN

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCAGACG------
AAGGCCAGATGGTCCGG

POL002.1_INR/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCAGACG-
-TCAGTCTT

MA0504.1_NR2C2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCAGACG---
AGGGGTCAGAGGTCA