Information for motif34


Reverse Opposite:

p-value:1e-8
log p-value:-1.867e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets468.2 +/- 408.4bp
Average Position of motif in Background823.6 +/- 242.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGCTCTGCCCG--
NNGCNCTGCGCGGC

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCTCTGCCCG
NNNNTGAGCACTGTNNG

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GAGCTCTGCCCG--
-----CTGCCCGCA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTCTGCCCG-
TGACCTTTGCCCTA

MA0504.1_NR2C2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTCTGCCCG--
TGACCTCTGACCCCN

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCTGCCCG-
TGACCTTTGCCCCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTCTGCCCG--
TGACCTTTGCCCTAN

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTCTGCCCG-
TGACCTTTGACCTC

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGCTCTGCCCG
NCTGACCTTTG----

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGCTCTGCCCG--
NAGCCCCGCCCCCN