Information for motif38


Reverse Opposite:

p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.530
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets364.1 +/- 344.6bp
Average Position of motif in Background352.7 +/- 272.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GAATAGAC
CCAAAAATAG--

MA0479.1_FOXH1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAATAGAC-
TCCAATCCACA

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATAGAC---
SSAATCCACANN

MA0040.1_Foxq1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAATAGAC----
-AATAAACAATN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GAATAGAC
DCYAAAAATAGM-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAATAGAC--
--BCAGACWA

MA0497.1_MEF2C/Jaspar

Match Rank:7
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GAATAGAC
ATGCTAAAAATAGAA

MA0052.2_MEF2A/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GAATAGAC-
AGCTAAAAATAGCAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAATAGAC----
--CCAGACRSVB

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------GAATAGAC
TTGCCCGGATTAGG-