Information for motif39


Reverse Opposite:

p-value:1e-6
log p-value:-1.492e+01
Information Content per bp:1.669
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif36.8
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets642.9 +/- 381.6bp
Average Position of motif in Background1035.6 +/- 642.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--ACGTCCGCCC
TAACGTCCGC--

PB0110.1_Bcl6b_2/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ACGTCCGCCC------
ATCCCCGCCCCTAAAA

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ACGTCCGCCC-----
AAGCATACGCCCAACTT

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ACGTCCGCCC---
NAGCCCCGCCCCCN

PB0202.1_Zfp410_2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACGTCCGCCC------
TCACCCCGCCCCAAATT

MA0162.2_EGR1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACGTCCGCCC-----
-CCCCCGCCCCCGCC

MA0079.3_SP1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACGTCCGCCC--
-GCCCCGCCCCC

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ACGTCCGCCC-------
---TCCGCCCCCGCATT

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACGTCCGCCC------
-GCCCCGCCCCCTCCC

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ACGTCCGCCC-----
---YCCGCCCACGCN