Information for motif4


Reverse Opposite:

p-value:1e-24
log p-value:-5.666e+01
Information Content per bp:1.899
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets334.6 +/- 330.1bp
Average Position of motif in Background629.0 +/- 303.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGCTTGAKCC-----
GANNATTAATCCCTNNN

PH0025.1_Dmbx1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTGAKCC------
NNNATTAATCCGNTTNA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CGCTTGAKCC
--GCTAATCC

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCTTGAKCC-----
GNNNATTAATCCCTNCN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGCTTGAKCC--
----TAATCCCN

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCTTGAKCC------
AGGCTAATCCCCAANG

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CGCTTGAKCC--
NNANTGATTGATNNNN

MA0506.1_NRF1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCTTGAKCC
GCGCCTGCGCA

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGCTTGAKCC------
--NNTAATCCNGNCNN

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGCTTGAKCC
NGCTN-----