Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.530
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif33.7
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets522.7 +/- 475.8bp
Average Position of motif in Background806.4 +/- 639.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTATAGATGGGG---
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTATAGATGGGG---
GTATAAAAGGCGGGG

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTATAGATGGGG
NTATYGATCH--

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTATAGATGGGG
-AACAGATGGC-

MA0056.1_MZF1_1-4/Jaspar

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GTATAGATGGGG-
-------TGGGGA

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GTATAGATGGGG-
ANNNGGATATATCCNNN

MA0057.1_MZF1_5-13/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTATAGATGGGG--
----GGAGGGGGAA

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GTATAGATGGGG--
NNNNNATTGATGNGTGN

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GTATAGATGGGG
---CAGATGGC-

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GTATAGATGGGG
GNCTATAAAAGG--