Information for motif42


Reverse Opposite:

p-value:1e-4
log p-value:-1.056e+01
Information Content per bp:1.530
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif82.0
Percentage of Background Sequences with motif2.31%
Average Position of motif in Targets723.7 +/- 452.6bp
Average Position of motif in Background738.0 +/- 464.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGCGGCCG---
-GCGGACGTTN

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCGGCCG
CTAGGCCT

MA0146.2_Zfx/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CGCGGCCG-
GGGGCCGAGGCCTG

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------CGCGGCCG
NNGCNCTGCGCGGC--

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGCGGCCG-----
GGNGCGNCTGTTNNN

MA0048.1_NHLH1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCGGCCG---
GCGCAGCTGCGT

MA0506.1_NRF1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGCGGCCG-
TGCGCAGGCGC

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGCGGCCG--
ANTGCGGGGGCGGN

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCGGCCG--
NGCGTGGGCGGR

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGCGGCCG
AGCGCGCC--