Information for motif43


Reverse Opposite:

p-value:1e-4
log p-value:-9.971e+00
Information Content per bp:1.683
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif20.8
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets354.3 +/- 253.8bp
Average Position of motif in Background858.0 +/- 814.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTCGTCGAGA-----
TTGACCGAGAATTCC

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCGTCGAGA
---GTGGAT-

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTCGTCGAGA-----
GNNACCGAGAATNNN

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTCGTCGAGA-----
NNNACCGAGAGTNNN

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTCGTCGAGA--
TCCGTCGCTTAAAAG

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCGTCGAGA--
TAAAGTCGTAAAACGT

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTCGTCGAGA--
TAAAGTCGTAAAATAG

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTCGTCGAGA---
TAAGGTCGTAAAATCCT

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTCGTCGAGA---
TTAGGTCGTAAAATTTC

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GTCGTCGAGA--
TAAAGTCGTAAAACAT