Information for motif46


Reverse Opposite:

p-value:1e-3
log p-value:-7.192e+00
Information Content per bp:1.953
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif29.2
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets722.6 +/- 504.1bp
Average Position of motif in Background568.6 +/- 507.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GGCACGCG----
GTGCCACGCGACTG

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:GGCACGCG
--CACGCA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGCACGCG-
TBGCACGCAA

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GGCACGCG-
NGKCACGTGM

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCACGCG
GNCACGTG

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGCACGCG
GHCACGTG

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGCACGCG-
GGTCACGTGA

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GGCACGCG--
--CACGTGGN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GGCACGCG-
-GCACGTNC

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGCACGCG
--CACGTG