Information for motif48


Reverse Opposite:

p-value:1e-2
log p-value:-5.571e+00
Information Content per bp:1.530
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif42.6
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets556.2 +/- 451.9bp
Average Position of motif in Background497.9 +/- 509.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAGCTCGC
CAGATGGC

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAGCTCGC
NAHCAGCTGD-

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAGCTCGC
VNAVCAGCTGGC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTCGC
AACAGATGGC

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTCGC
CAGCAGCTGN-

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGCTCGC
CAGCC---

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCTCGC
AACAGCTG--

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTCGC
NTGCAGCTGTG

MA0500.1_Myog/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCTCGC-
GACAGCTGCAG

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCTCGC-
-AGCGCGCC