Information for motif1


Reverse Opposite:

p-value:1e-44
log p-value:-1.027e+02
Information Content per bp:1.654
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets343.3 +/- 317.3bp
Average Position of motif in Background810.8 +/- 43.2bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GTAACAAAGTGG
---ACAAAG---

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GTAACAAAGTGG--
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTAACAAAGTGG--
ATAAGAACAAAGGACTA

MA0514.1_Sox3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTAACAAAGTGG
AAAACAAAGG--

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTAACAAAGTGG
--AACAAT----

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTAACAAAGTGG
AAAAATAACAAACGG-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTAACAAAGTGG
--RACAAWGG--

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTAACAAAGTGG
--AACAAAGG--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTAACAAAGTGG
RNAACAATGG--

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTAACAAAGTGG
GTAAACAAT----