Information for motif15


Reverse Opposite:

p-value:1e-23
log p-value:-5.397e+01
Information Content per bp:1.808
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets282.6 +/- 288.0bp
Average Position of motif in Background1133.6 +/- 221.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0504.1_NR2C2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:WGGCGTCAGAGA---
AGGGGTCAGAGGTCA

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----WGGCGTCAGAGA-
GGCGAGGGGTCAAGGGC

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----WGGCGTCAGAGA-
TNNNNGGTGTCATNTNT

MA0018.2_CREB1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:WGGCGTCAGAGA
TGACGTCA----

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:WGGCGTCAGAGA-
AGGTGNCAGACAG

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----WGGCGTCAGAGA-
NTNNNGGGGTCANGNNN

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WGGCGTCAGAGA
AGGTGHCAGACA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:WGGCGTCAGAGA---
-GAGGTCAAAGGTCA

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-WGGCGTCAGAGA
GTGGCGTGACNG-

MA0523.1_TCF7L2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:WGGCGTCAGAGA--
AAAGATCAAAGGAA