Information for motif17


Reverse Opposite:

p-value:1e-22
log p-value:-5.209e+01
Information Content per bp:1.595
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets471.7 +/- 491.3bp
Average Position of motif in Background629.3 +/- 379.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAACCTCATATT----
GCAACCTCATTATNNNN

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAACCTCATATT------
----CTAATATTGCTAAA

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAACCTCATATT
AAACCACANN--

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAACCTCATATT----
NNNACCTCATTATCNTN

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAACCTCATATT--
--GKVTCADRTTWC

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAACCTCATATT
NAAACCACAG---

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAACCTCATATT
NWAACCACADNN-

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAACCTCATATT
--ACGTCA----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAACCTCATATT
AAACCACAGC--

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAACCTCATATT---
NNATNTGATANNNNN