Information for motif18


Reverse Opposite:

p-value:1e-22
log p-value:-5.198e+01
Information Content per bp:1.930
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets380.5 +/- 305.0bp
Average Position of motif in Background666.4 +/- 559.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAGATATTTG
AAGGATATNTN

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AAGATATTTG---
GACAGAGATATCAGTGT

MA0042.1_FOXI1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGATATTTG---
-GGATGTTTGTTT

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AAGATATTTG
NNTNNCAATATTAG

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AAGATATTTG--
NNTAATTATAATTNNN

PB0069.1_Sox21_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAGATATTTG--
TTTAATTATAATTAAG

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAGATATTTG--
NANTATTATAATTNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGATATTTG----
--KCTATTTTTRGH

MA0497.1_MEF2C/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGATATTTG------
-TTCTATTTTTAGNNN

MA0125.1_Nobox/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAGATATTTG--
----TAATTGGT