Information for motif24


Reverse Opposite:

p-value:1e-18
log p-value:-4.282e+01
Information Content per bp:1.508
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets332.0 +/- 287.1bp
Average Position of motif in Background547.4 +/- 373.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0594.1_Hoxa9/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGAATTATGGGG
TGATTTATGGC-

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGAATTATGGGG
NNCTNAATTATGANN

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGAATTATGGGG
TGATTTATGGCC

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGAATTATGGGG
TGATTGATGA--

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGAATTATGGGG
TGATTTATGGCC

MA0485.1_Hoxc9/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGAATTATGGGG
NTGATTTATGGCC

MA0088.1_znf143/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGAATTATGGGG----
GCAAGGCATGATGGGAAATC

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGAATTATGGGG---
RGSMTBCTGGGAAAT

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGAATTATGGGG
TGATTRATGGCY

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGAATTATGGGG
--AATTA-----