Information for motif26


Reverse Opposite:

p-value:1e-16
log p-value:-3.862e+01
Information Content per bp:1.508
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets319.7 +/- 247.8bp
Average Position of motif in Background534.9 +/- 435.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CATAATCCCCAC-
NNNAATTAATCCCCNCN

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CATAATCCCCAC--
AGGCTAATCCCCAANG

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CATAATCCCCAC
--TAATCCCN--

MA0056.1_MZF1_1-4/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CATAATCCCCAC
-----TCCCCA-

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATAATCCCCAC
GNNAGCTAATCCCCCN

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATAATCCCCAC-
GANNATTAATCCCTNNN

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CATAATCCCCAC--
ATAGTTAATCCCCCTCA

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATAATCCCCAC--
NNTAATCCNGNCNN

MA0479.1_FOXH1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CATAATCCCCAC
TCCAATCCACA-

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CATAATCCCCAC--
ATAGTTAATCCCCCNNA