Information for motif29


Reverse Opposite:

p-value:1e-16
log p-value:-3.787e+01
Information Content per bp:1.872
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets377.7 +/- 291.1bp
Average Position of motif in Background811.8 +/- 443.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TGCCTAATAG-
---CTAATKGV

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGCCTAATAG-----
-CCTTAATNGNTTTT

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGCCTAATAG
---CTAATT-

MA0125.1_Nobox/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TGCCTAATAG--
----TAATTGGT

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TGCCTAATAG-
ACCGTGACTAATTNN

MA0063.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGCCTAATAG
---TTAATTG

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGCCTAATAG-
GGGTGTGCCCAAAAGG

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TGCCTAATAG-
AAAATATGCATAATAAA

MA0075.1_Prrx2/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGCCTAATAG
----TAATT-

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTAATAG-----
ACNNCTAATTAGNNNN