Information for motif3


Reverse Opposite:

p-value:1e-39
log p-value:-9.170e+01
Information Content per bp:1.809
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets406.5 +/- 417.2bp
Average Position of motif in Background1302.6 +/- 315.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTAATGCATTCA----
NNCATTCATTCATNNN

MA0468.1_DUX4/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTAATGCATTCA
-TAATTTAATCA

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CTAATGCATTCA-------
-----ACATTCATGACACG

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAATGCATTCA----
NNNNTGAATTCANNNC

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTAATGCATTCA--
NNNTATTGAATTGNNN

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTAATGCATTCA---
CCATTGTATGCAAAT

PH0014.1_Cphx/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTAATGCATTCA--
ATGATCGAATCAAA

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTAATGCATTCA
CTAATT------

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTAATGCATTCA
-TAATTGATTA-

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTAATGCATTCA------
-GACCACATTCATACAAT