Information for motif34


Reverse Opposite:

p-value:1e-14
log p-value:-3.413e+01
Information Content per bp:1.603
Number of Target Sequences with motif1301.0
Percentage of Target Sequences with motif35.13%
Number of Background Sequences with motif1146.8
Percentage of Background Sequences with motif29.14%
Average Position of motif in Targets438.3 +/- 385.4bp
Average Position of motif in Background485.0 +/- 420.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0141.1_Pknox2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
NNATTGACAGGTGCTT

PH0104.1_Meis2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
NTATTGACAGGTNNTN

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ATTGACGG------
GATATTGACAGCTGCGT

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
NTATTGACAGCTNNTT

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
GGATTGACAGGTCNTT

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
GTATTGACAGGTNNTT

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG------
GTATTGACAGCTNNTT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATTGACGG-
NTGATTGACAGN

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGACGG----
NNNNNATTGATGNGTGN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACGG--
TGAGTGACAGSC