Information for motif37


Reverse Opposite:

p-value:1e-13
log p-value:-3.152e+01
Information Content per bp:1.976
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets369.7 +/- 268.2bp
Average Position of motif in Background718.2 +/- 245.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:AGAATTAAAG
---ATTAAA-

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGAATTAAAG
--AATTA---

MA0158.1_HOXA5/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGAATTAAAG
--AATTAGTG

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGAATTAAAG
--AATTAG--

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAATTAAAG
NGGGATTA---

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAATTAAAG---
ACAAGCAATTAATGAAT

MA0063.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAATTAAAG
-CAATTAA--

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAATTAAAG-
ATAAACAATTAAACA

PH0011.1_Alx1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGAATTAAAG--
NNNAATTAATTAANGNG

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGAATTAAAG
NNNTAACAATTATAN