Information for motif39


Reverse Opposite:

p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets347.0 +/- 288.3bp
Average Position of motif in Background474.8 +/- 457.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGCCAAAATC
TGCCAA----

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCAAAATC------
AAGGCGAAATCATCGCA

NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGCCAAAATC------
TGCCAAAATAAACANN

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGCCAAAATC----
----CAAATCACTG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAAAATC
BCAGACWA----

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCCAAAATC
CAGCC------

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAAAATC
AAACCACAGAN

MA0511.1_RUNX2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAAAATC---
CAAACCACAAACCCC

MA0483.1_Gfi1b/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGCCAAAATC------
-----AAATCACAGCA

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGCCAAAATC
GAAAGTGAAAGT-