Information for motif4


Reverse Opposite:

p-value:1e-39
log p-value:-9.143e+01
Information Content per bp:1.860
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets336.5 +/- 330.1bp
Average Position of motif in Background450.5 +/- 284.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCTGAAGTG
CCNNACCATCTGGCCTN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCATCTGAAGTG
ANCAGCTG-----

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCATCTGAAGTG
-CCTTTGAWGT-

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCTGAAGTG
NNNNAGCAGCTGCTGAN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCTGAAGTG
NNTNCGCACCTGTNGAN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCATCTGAAGTG
GCCATCTGTT---

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCATCTGAAGTG-----
NANTTTCAAGTGGTTAN

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCATCTGAAGTG
GCCATCTG-----

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCATCTGAAGTG
NNACAGCTGC----

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCATCTGAAGTG
RCCATMTGTT---