Information for motif40


Reverse Opposite:

p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets357.1 +/- 263.5bp
Average Position of motif in Background880.8 +/- 988.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AAAGAGGGTAAG---
----CAGGTAAGTAT

MA0467.1_Crx/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAAGAGGGTAAG
-AAGAGGATTAG

MA0508.1_PRDM1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAGAGGGTAAG---
AGAAAGTGAAAGTGA

MA0111.1_Spz1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAAGAGGGTAAG---
----AGGGTAACAGC

MA0080.3_Spi1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAGAGGGTAAG---
AAAAAGAGGAAGTGA

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAAGAGGGTAAG-
-GAAAGTGAAAGT

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGAGGGTAAG
NTNNTTAAGTGGNTNAN

MA0083.2_SRF/Jaspar

Match Rank:8
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------AAAGAGGGTAAG
CATGCCCAAATAAGGCAA-

MA0072.1_RORA_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AAAGAGGGTAAG
TATAAGTAGGTCAA

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGAGGGTAAG
NTNNTTAAGTGGTTANN