Information for motif42


Reverse Opposite:

p-value:1e-7
log p-value:-1.667e+01
Information Content per bp:1.530
Number of Target Sequences with motif153.0
Percentage of Target Sequences with motif4.13%
Number of Background Sequences with motif103.7
Percentage of Background Sequences with motif2.64%
Average Position of motif in Targets400.1 +/- 341.2bp
Average Position of motif in Background460.0 +/- 373.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTGC--
NNTCCTGCTGTGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTGC--
TNTCCTGCTGTGNNG

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGCTGTGC
-GCTGTG-

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTGC--
TCNCCTGCTGNGNNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTGC----
NNNANTGCAGTGCNNTT

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTGC
CCCCCTGCTGTG-

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TGCTGTGC----
NNNNTTGTGTGCTTNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGCTGTGC----
--CTGTTCCTGG

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGCTGTGC
NGCTN---

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGCTGTGC---
GTNTTGTTGTGANNT