Information for motif47


Reverse Opposite:

p-value:1e-3
log p-value:-9.049e+00
Information Content per bp:1.943
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets446.7 +/- 322.7bp
Average Position of motif in Background564.4 +/- 334.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.87
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0467.1_Crx/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGCAGATTAG
AAGAGGATTAG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AGCAGATTAG-
---GGATTAGC

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCAGATTAG--
AAAAACGGATTATTG

MA0482.1_Gata4/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCAGATTAG-
NNGAGATAAGA

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGCAGATTAG--
--CAGATAAGGN

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCAGATTAG----
TGAACCGGATTAATGAA

MA0035.3_Gata1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCAGATTAG--
-ANAGATAAGAA

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCAGATTAG-
TTGCCCGGATTAGG

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCAGATTAG-
-NBWGATAAGR

PB0042.1_Mafk_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAGATTAG
AAGTCAGCANTTTTN