Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3703)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 3935)	% of Background Sequences with Motif
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-12	-2.949e+01	0.0000	1268.0	34.24%	1130.9	28.74%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-11	-2.654e+01	0.0000	678.0	18.31%	559.5	14.22%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-11	-2.636e+01	0.0000	1300.0	35.11%	1176.0	29.88%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-10	-2.434e+01	0.0000	1988.0	53.69%	1900.1	48.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-9	-2.175e+01	0.0000	2037.0	55.01%	1965.3	49.94%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-8	-2.014e+01	0.0000	1048.0	28.30%	947.8	24.09%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-7	-1.798e+01	0.0000	2002.0	54.06%	1948.4	49.51%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-7	-1.717e+01	0.0000	510.0	13.77%	429.9	10.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-7	-1.667e+01	0.0000	1091.0	29.46%	1007.3	25.60%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-6	-1.572e+01	0.0000	763.0	20.60%	682.3	17.34%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.564e+01	0.0000	1672.0	45.15%	1613.5	41.00%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.321e+01	0.0000	273.0	7.37%	218.6	5.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.247e+01	0.0001	924.0	24.95%	860.9	21.88%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.233e+01	0.0001	1406.0	37.97%	1356.4	34.47%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-5	-1.216e+01	0.0001	1585.0	42.80%	1544.7	39.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.181e+01	0.0001	1466.0	39.59%	1422.1	36.14%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-1.150e+01	0.0001	1126.0	30.41%	1072.1	27.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-1.095e+01	0.0002	1028.0	27.76%	975.9	24.80%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-9.981e+00	0.0006	382.0	10.32%	333.4	8.47%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-9.931e+00	0.0006	914.0	24.68%	865.4	21.99%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-4	-9.587e+00	0.0008	562.0	15.18%	512.1	13.01%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-8.828e+00	0.0016	1019.0	27.52%	980.4	24.92%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-3	-8.638e+00	0.0019	106.0	2.86%	78.2	1.99%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-3	-8.416e+00	0.0023	1172.0	31.65%	1141.5	29.01%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-8.399e+00	0.0023	452.0	12.21%	409.3	10.40%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-7.898e+00	0.0035	727.0	19.63%	688.8	17.50%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.719e+00	0.0040	303.0	8.18%	266.7	6.78%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.491e+00	0.0049	986.0	26.63%	957.0	24.32%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.838e+00	0.0091	566.0	15.28%	532.6	13.53%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-6.836e+00	0.0091	369.0	9.96%	335.0	8.51%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.756e+00	0.0092	101.0	2.73%	78.6	2.00%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.699e+00	0.0095	2699.0	72.89%	2779.2	70.63%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-6.582e+00	0.0103	715.0	19.31%	685.2	17.41%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-6.015e+00	0.0177	1742.0	47.04%	1760.7	44.74%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.992e+00	0.0177	504.0	13.61%	475.1	12.07%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.945e+00	0.0179	563.0	15.20%	535.4	13.61%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-2	-5.945e+00	0.0179	762.0	20.58%	738.0	18.75%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.873e+00	0.0182	204.0	5.51%	178.6	4.54%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.701e+00	0.0211	1482.0	40.02%	1489.2	37.85%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.639e+00	0.0219	703.0	18.98%	680.9	17.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.611e+00	0.0219	649.0	17.53%	625.4	15.89%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.589e+00	0.0219	1498.0	40.45%	1507.4	38.31%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.511e+00	0.0231	190.0	5.13%	166.9	4.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.393e+00	0.0254	2284.0	61.68%	2345.0	59.59%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.391e+00	0.0254	130.0	3.51%	109.8	2.79%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.219e+00	0.0289	475.0	12.83%	451.5	11.47%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.131e+00	0.0309	411.0	11.10%	387.8	9.86%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-5.130e+00	0.0309	1236.0	33.38%	1237.2	31.44%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-5.116e+00	0.0309	1047.0	28.27%	1040.9	26.45%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-5.030e+00	0.0322	245.0	6.62%	222.0	5.64%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-4.987e+00	0.0329	140.0	3.78%	120.3	3.06%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.813e+00	0.0384	738.0	19.93%	723.0	18.37%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-4.811e+00	0.0384	1634.0	44.13%	1659.7	42.18%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.707e+00	0.0411	119.0	3.21%	101.3	2.57%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-4.634e+00	0.0434	151.0	4.08%	132.2	3.36%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.597e+00	0.0443	939.0	25.36%	933.7	23.73%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-4.528e+00	0.0466	894.0	24.14%	887.6	22.56%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.087e+00	0.0712	493.0	13.31%	478.4	12.16%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-4.006e+00	0.0759	111.0	3.00%	96.7	2.46%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.005e+00	0.0759	199.0	5.37%	182.9	4.65%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.988e+00	0.0759	615.0	16.61%	604.6	15.36%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.795e+00	0.0892	922.0	24.90%	924.0	23.48%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.775e+00	0.0895	85.0	2.30%	72.8	1.85%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.773e+00	0.0895	33.0	0.89%	24.7	0.63%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.676e+00	0.0958	7.0	0.19%	3.7	0.09%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.651e+00	0.0968	194.0	5.24%	179.5	4.56%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.580e+00	0.1024	1606.0	43.37%	1645.3	41.81%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.548e+00	0.1042	81.0	2.19%	69.7	1.77%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.495e+00	0.1082	176.0	4.75%	162.5	4.13%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.425e+00	0.1144	1292.0	34.89%	1316.9	33.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.365e+00	0.1197	2195.0	59.28%	2274.3	57.80%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.249e+00	0.1327	346.0	9.34%	335.7	8.53%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.230e+00	0.1333	597.0	16.12%	593.8	15.09%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.164e+00	0.1404	444.0	11.99%	436.0	11.08%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.070e+00	0.1523	54.0	1.46%	45.5	1.16%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.041e+00	0.1546	2565.0	69.27%	2675.1	67.98%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.000e+00	0.1590	385.0	10.40%	377.8	9.60%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.992e+00	0.1590	521.0	14.07%	517.3	13.15%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.925e+00	0.1671	96.0	2.59%	86.4	2.20%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.893e+00	0.1704	828.0	22.36%	837.0	21.27%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.864e+00	0.1732	215.0	5.81%	205.6	5.23%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.858e+00	0.1732	1436.0	38.78%	1476.2	37.51%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.820e+00	0.1766	397.0	10.72%	391.2	9.94%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.819e+00	0.1766	554.0	14.96%	553.9	14.08%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.775e+00	0.1804	746.0	20.15%	753.4	19.14%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.754e+00	0.1822	641.0	17.31%	644.4	16.37%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.610e+00	0.2079	70.0	1.89%	62.2	1.58%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.586e+00	0.2105	2102.0	56.76%	2187.3	55.59%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.564e+00	0.2128	1698.0	45.85%	1758.2	44.68%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.544e+00	0.2148	405.0	10.94%	402.6	10.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.517e+00	0.2182	12.0	0.32%	8.5	0.22%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.416e+00	0.2388	291.0	7.86%	286.6	7.28%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.383e+00	0.2442	890.0	24.03%	910.0	23.13%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.321e+00	0.2569	423.0	11.42%	423.7	10.77%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.307e+00	0.2579	526.0	14.20%	530.3	13.48%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.294e+00	0.2585	354.0	9.56%	352.2	8.95%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.238e+00	0.2706	1005.0	27.14%	1032.2	26.23%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.218e+00	0.2731	1057.0	28.54%	1087.8	27.64%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.158e+00	0.2871	1279.0	34.54%	1322.8	33.62%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.111e+00	0.2978	175.0	4.73%	170.1	4.32%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.092e+00	0.3007	319.0	8.61%	318.3	8.09%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.005e+00	0.3248	909.0	24.55%	935.4	23.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.962e+00	0.3325	24.0	0.65%	20.6	0.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.962e+00	0.3325	24.0	0.65%	20.3	0.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.958e+00	0.3325	1743.0	47.07%	1817.8	46.19%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.903e+00	0.3461	1886.0	50.93%	1970.4	50.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.894e+00	0.3461	222.0	6.00%	220.6	5.60%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.789e+00	0.3807	1189.0	32.11%	1234.9	31.38%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.788e+00	0.3807	43.0	1.16%	39.5	1.01%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.788e+00	0.3807	90.0	2.43%	86.7	2.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.786e+00	0.3807	1259.0	34.00%	1308.1	33.24%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.763e+00	0.3807	1286.0	34.73%	1337.3	33.98%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.756e+00	0.3807	177.0	4.78%	175.6	4.46%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.745e+00	0.3807	619.0	16.72%	635.7	16.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.727e+00	0.3807	1325.0	35.78%	1379.7	35.06%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.718e+00	0.3807	944.0	25.49%	977.0	24.83%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.662e+00	0.3991	2009.0	54.25%	2106.2	53.52%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.621e+00	0.4122	449.0	12.13%	459.4	11.68%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.586e+00	0.4232	393.0	10.61%	401.2	10.19%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.583e+00	0.4232	67.0	1.81%	64.1	1.63%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.497e+00	0.4549	132.0	3.56%	131.1	3.33%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.444e+00	0.4760	76.0	2.05%	74.7	1.90%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.426e+00	0.4805	386.0	10.42%	396.5	10.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.340e+00	0.5196	120.0	3.24%	120.4	3.06%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.319e+00	0.5264	474.0	12.80%	490.4	12.46%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.300e+00	0.5320	1037.0	28.00%	1084.6	27.56%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.293e+00	0.5320	385.0	10.40%	397.7	10.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.289e+00	0.5320	1768.0	47.75%	1859.3	47.25%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.287e+00	0.5320	1735.0	46.85%	1824.8	46.37%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.285e+00	0.5320	320.0	8.64%	329.4	8.37%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.262e+00	0.5320	179.0	4.83%	182.8	4.65%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.256e+00	0.5320	1705.0	46.04%	1794.0	45.59%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.249e+00	0.5320	222.0	6.00%	227.7	5.79%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.197e+00	0.5544	272.0	7.35%	280.5	7.13%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.107e+00	0.6025	63.0	1.70%	63.6	1.62%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.103e+00	0.6025	244.0	6.59%	252.7	6.42%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.072e+00	0.6145	107.0	2.89%	109.3	2.78%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.063e+00	0.6158	1453.0	39.24%	1531.4	38.92%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.058e+00	0.6158	1119.0	30.22%	1177.8	29.93%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.029e+00	0.6281	484.0	13.07%	506.2	12.86%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.007e+00	0.6374	274.0	7.40%	285.6	7.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.935e-01	0.6415	193.0	5.21%	200.7	5.10%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.669e-01	0.6542	601.0	16.23%	631.9	16.06%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-9.586e-01	0.6550	820.0	22.14%	863.8	21.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.490e-01	0.6568	181.0	4.89%	188.4	4.79%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.249e-01	0.6682	855.0	23.09%	901.3	22.90%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.958e-01	0.6832	1254.0	33.86%	1325.8	33.69%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.798e-01	0.6896	1955.0	52.80%	2070.3	52.61%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.678e-01	0.6932	475.0	12.83%	500.6	12.72%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.678e-01	0.6932	178.0	4.81%	186.7	4.74%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.623e-01	0.6932	2686.0	72.54%	2849.0	72.40%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.559e-01	0.6932	1053.0	28.44%	1113.6	28.30%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-8.549e-01	0.6932	82.0	2.21%	85.3	2.17%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.394e-01	0.6932	665.0	17.96%	702.6	17.86%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.768e-01	0.7299	356.0	9.61%	376.0	9.56%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.594e-01	0.7379	116.0	3.13%	122.9	3.12%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.344e-01	0.7518	746.0	20.15%	791.0	20.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.324e-01	0.7518	745.0	20.12%	790.7	20.09%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.206e-01	0.7526	91.0	2.46%	96.9	2.46%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-7.023e-01	0.7617	954.0	25.76%	1013.7	25.76%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.973e-01	0.7617	1447.0	39.08%	1537.1	39.06%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.971e-01	0.7617	615.0	16.61%	653.7	16.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.935e-01	0.7617	949.0	25.63%	1008.7	25.63%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.887e-01	0.7617	595.0	16.07%	632.5	16.07%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.649e-01	0.7668	19.0	0.51%	20.8	0.53%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.270e-01	0.7917	133.0	3.59%	142.1	3.61%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.222e-01	0.7917	955.0	25.79%	1017.2	25.85%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.204e-01	0.7917	268.0	7.24%	286.1	7.27%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.193e-01	0.7917	749.0	20.23%	798.5	20.29%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.886e-01	0.8033	287.0	7.75%	307.3	7.81%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.739e-01	0.8104	1066.0	28.79%	1137.8	28.91%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.695e-01	0.8104	280.0	7.56%	300.1	7.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.406e-01	0.8282	197.0	5.32%	212.8	5.41%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.305e-01	0.8318	57.0	1.54%	62.5	1.59%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.302e-01	0.8318	208.0	5.62%	224.3	5.70%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.299e-01	0.8318	110.0	2.97%	119.3	3.03%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.205e-01	0.8318	617.0	16.66%	661.9	16.82%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.050e-01	0.8341	820.0	22.14%	878.6	22.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.038e-01	0.8341	713.0	19.25%	764.4	19.43%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.010e-01	0.8341	636.0	17.18%	682.8	17.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.881e-01	0.8342	250.0	6.75%	270.4	6.87%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.698e-01	0.8450	84.0	2.27%	92.3	2.35%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.489e-01	0.8580	813.0	21.96%	873.3	22.19%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.006e-01	0.8956	779.0	21.04%	839.3	21.33%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.912e-01	0.8992	151.0	4.08%	166.8	4.24%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.656e-01	0.9176	1078.0	29.11%	1160.1	29.48%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.519e-01	0.9253	367.0	9.91%	400.1	10.17%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.503e-01	0.9253	990.0	26.74%	1067.2	27.12%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.192e-01	0.9459	509.0	13.75%	554.5	14.09%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.968e-01	0.9623	812.0	21.93%	880.7	22.38%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.906e-01	0.9631	463.0	12.50%	506.1	12.86%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.825e-01	0.9659	367.0	9.91%	403.5	10.26%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.792e-01	0.9659	58.0	1.57%	67.6	1.72%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.740e-01	0.9659	977.0	26.38%	1058.5	26.90%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.510e-01	0.9815	183.0	4.94%	205.5	5.22%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.495e-01	0.9815	578.0	15.61%	632.6	16.08%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.475e-01	0.9815	725.0	19.58%	790.2	20.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.436e-01	0.9815	169.0	4.56%	190.1	4.83%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.425e-01	0.9815	87.0	2.35%	100.3	2.55%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.048e-01	1.0000	143.0	3.86%	163.1	4.15%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.826e-01	1.0000	1098.0	29.65%	1195.3	30.38%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.824e-01	1.0000	106.0	2.86%	123.3	3.13%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.589e-01	1.0000	532.0	14.37%	590.0	14.99%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.587e-01	1.0000	81.0	2.19%	96.0	2.44%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.587e-01	1.0000	81.0	2.19%	96.0	2.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.445e-01	1.0000	244.0	6.59%	277.7	7.06%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.378e-01	1.0000	1980.0	53.47%	2140.3	54.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.308e-01	1.0000	121.0	3.27%	143.0	3.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.178e-01	1.0000	717.0	19.36%	793.2	20.16%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.107e-01	1.0000	14.0	0.38%	20.0	0.51%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.075e-01	1.0000	39.0	1.05%	50.9	1.29%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.072e-01	1.0000	246.0	6.64%	282.1	7.17%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.021e-01	1.0000	302.0	8.16%	344.7	8.76%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.604e-02	1.0000	1268.0	34.24%	1388.2	35.28%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.501e-02	1.0000	1440.0	38.89%	1572.8	39.97%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.130e-02	1.0000	16.0	0.43%	24.0	0.61%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.028e-02	1.0000	150.0	4.05%	177.3	4.51%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.711e-02	1.0000	58.0	1.57%	73.9	1.88%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.548e-02	1.0000	265.0	7.16%	305.1	7.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.497e-02	1.0000	172.0	4.64%	202.2	5.14%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.420e-02	1.0000	254.0	6.86%	293.3	7.45%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.007e-02	1.0000	98.0	2.65%	120.9	3.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.364e-02	1.0000	74.0	2.00%	93.3	2.37%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.319e-02	1.0000	202.0	5.46%	239.6	6.09%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.275e-02	1.0000	638.0	17.23%	718.3	18.25%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.977e-02	1.0000	92.0	2.48%	115.9	2.94%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.521e-02	1.0000	354.0	9.56%	410.0	10.42%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.389e-02	1.0000	682.0	18.42%	768.9	19.54%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.906e-02	1.0000	153.0	4.13%	186.5	4.74%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-3.730e-02	1.0000	22.0	0.59%	33.6	0.85%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.927e-02	1.0000	523.0	14.12%	599.8	15.24%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.849e-02	1.0000	1174.0	31.70%	1305.1	33.17%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.606e-02	1.0000	383.0	10.34%	446.8	11.35%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.741e-02	1.0000	8.0	0.22%	16.4	0.42%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.612e-02	1.0000	515.0	13.91%	596.4	15.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.517e-02	1.0000	308.0	8.32%	367.6	9.34%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.392e-02	1.0000	311.0	8.40%	371.6	9.44%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.353e-02	1.0000	1236.0	33.38%	1381.7	35.11%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.094e-02	1.0000	70.0	1.89%	96.6	2.45%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.845e-03	1.0000	191.0	5.16%	239.0	6.07%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-5.177e-03	1.0000	85.0	2.30%	117.1	2.98%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.096e-03	1.0000	560.0	15.12%	663.7	16.87%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.347e-03	1.0000	72.0	1.94%	107.0	2.72%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.350e-04	1.0000	207.0	5.59%	270.7	6.88%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.000e-06	1.0000	191.0	5.16%	278.8	7.09%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	158.0	4.27%	265.6	6.75%