Information for motif12


Reverse Opposite:

p-value:1e-16
log p-value:-3.843e+01
Information Content per bp:1.893
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets403.9 +/- 386.4bp
Average Position of motif in Background527.4 +/- 474.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTAGWAT-
NCNTTTGTTATTTNN

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTGTTAGWAT
ATTGTT-----

MA0087.1_Sox5/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTGTTAGWAT
ATTGTTA----

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------TTGTTAGWAT
CTATAATTGTTAGCG-

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TTGTTAGWAT-
TAATTGTTCTAAAC

MA0084.1_SRY/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTAGWAT
ATTGTTTAN--

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTGTTAGWAT
NTTTCTNAGAAA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTGTTAGWAT
CCATTGTTNY---

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTAGWAT--
NNTTTTGTTTTGATNT

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTGTTAGWAT---
TATCATTAGAACGCT