Information for motif18


Reverse Opposite:

p-value:1e-13
log p-value:-3.173e+01
Information Content per bp:1.864
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets459.3 +/- 406.2bp
Average Position of motif in Background538.9 +/- 549.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TKGATTTTAC-------
NNNATTTTACGACNNTN

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TKGATTTTAC-------
-ANATTTTACGAGNNNN

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TKGATTTTAC-------
ANNATTTTACGACNTNA

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TKGATTTTAC-------
-NAATTTTACGAGNTNN

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TKGATTTTAC-------
GNNNTTTTACGACCTNA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TKGATTTTAC--
NNATTGGACTTTNGNN

MA0105.3_NFKB1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TKGATTTTAC-
GGGAATTTCCC

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TKGATTTTAC------
NTNAATTTTATTGNATT

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TKGATTTTAC------
NNANTTTTATTGGNNN

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:TKGATTTTAC-----
-------TACTNNNN