Information for motif19


Reverse Opposite:

p-value:1e-13
log p-value:-3.041e+01
Information Content per bp:1.871
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets292.2 +/- 305.9bp
Average Position of motif in Background572.9 +/- 584.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAACACTCTTTA
ACAACAC------

MA0040.1_Foxq1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAACACTCTTTA--
---TATTGTTTATT

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAACACTCTTTA----
TAAGCCACTTGAAATT

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAACACTCTTTA-
-----CTGTTTAC

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAACACTCTTTA----
TAAGCCACTTGAAATT

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CAACACTCTTTA---
------TGTTTATTT

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAACACTCTTTA---
---NYYTGTTTACHN

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAACACTCTTTA----
CAAAATCAATTAATTT

MA0593.1_FOXP2/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAACACTCTTTA---
----TNTGTTTACTT

PH0094.1_Lhx4/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAACACTCTTTA-----
CAAAGCTAATTAGNTTN