Information for motif2


Reverse Opposite:

p-value:1e-28
log p-value:-6.567e+01
Information Content per bp:1.823
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets342.5 +/- 278.8bp
Average Position of motif in Background637.0 +/- 513.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGAGCCTTTAT
--CAGCC-----

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAGAGCCTTTAT
TTGAGTGSTT----

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AAGAGCCTTTAT
CTYRAGTGSY-----

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AAGAGCCTTTAT
AAGATATCCTT---

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGCCTTTAT
AATTTCAAGTGGCTTN--

MA0467.1_Crx/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGAGCCTTTAT
AAGAGGATTAG-

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----AAGAGCCTTTAT
NTNNNAGGAGTCTCNTN

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AAGAGCCTTTAT-
-----CCTTTGTT

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGCCTTTAT
AATNTTAAGTGGNTNN--

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGCCTTTAT
AANTTCAAGTGGCTTN--