Information for motif20


Reverse Opposite:

p-value:1e-13
log p-value:-3.007e+01
Information Content per bp:1.971
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets429.4 +/- 408.0bp
Average Position of motif in Background747.3 +/- 293.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTCAAAGCAG
ACATCAAAGG--

PB0082.1_Tcf3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTCAAAGCAG--
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAAAGCAG--
NNNAGATCAAAGGANNN

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCAAAGCAG
AAAGATCAAAGGAA

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTCAAAGCAG--
TATAGATCAAAGGAAAA

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCAAAGCAG----
CCACACAGCAGGAGA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCAAAGCAG----
--CACAGCAGGGGG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCAAAGCAG
ACWTCAAAGG--

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAAAGCAG--
NANAGATCAAAGGGNNN

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCAAAGCAG
ACATCAAAGGNA