Information for motif25


Reverse Opposite:

p-value:1e-12
log p-value:-2.766e+01
Information Content per bp:1.938
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets402.8 +/- 290.1bp
Average Position of motif in Background399.5 +/- 386.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ACACTGGTCA----
CGAACAGTGCTCACTAT

MA0512.1_Rxra/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACACTGGTCA--
-CAAAGGTCAGA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ACACTGGTCA
----AGGTCA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACACTGGTCA-
-CAAAGGTCAG

MA0442.1_SOX10/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACACTGGTCA
ACAAAG----

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACACTGGTCA
AACAAAGG---

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACACTGGTCA---
CAATCACTGGCAGAAT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACACTGGTCA----
TCTCAAAGGTCACGAG

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACACTGGTCA----
TCTCAAAGGTCACCTG

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACACTGGTCA
GAACAATGG---