Information for motif27


Reverse Opposite:

p-value:1e-11
log p-value:-2.624e+01
Information Content per bp:1.709
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets298.0 +/- 290.6bp
Average Position of motif in Background476.0 +/- 484.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------TGACAGCACTCA
NNNTGAGTGACAGCT----

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGACAGCACTCA-
---AAGCACTTAA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGACAGCACTCA--
---AGCCACTCAAG

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TGACAGCACTCA
GATATTGACAGCTGCGT

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGCACTCA
GGATTGACAGGTCNTT

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGACAGCACTCA
ATAAATGACACCTATCA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGACAGCACTCA-
---AASCACTCAA

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGACAGCACTCA
SCTGTCARCACC--

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGCACTCA
NTATTGACAGCTNNTT

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGCACTCA
NTATTGACAGGTNNTN