Information for motif28


Reverse Opposite:

p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets539.5 +/- 374.9bp
Average Position of motif in Background539.0 +/- 281.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CAAGGAATCATT
-----AATTATT

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAATCATT---
AAGGCGAAATCATCGCA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAGGAATCATT
NCTGGAATGC--

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAAGGAATCATT--
--AGGAAACAGCTG

MA0136.1_ELF5/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAAGGAATCATT
-AAGGAAGTA--

PH0161.1_Six1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAATCATT---
GATGGGGTATCATTTTT

PH0166.1_Six6_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAATCATT---
AATAGGGTATCAATATT

Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAAGGAATCATT-
-DATGASTCATHN

MA0476.1_FOS/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAAGGAATCATT
-NATGAGTCANN

MA0489.1_JUN_(var.2)/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAAGGAATCATT----
--ATGAGTCATNTNNT