Information for motif29


Reverse Opposite:

p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.765
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets434.8 +/- 307.4bp
Average Position of motif in Background692.3 +/- 476.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCCTATTCTT--
--CTATTTTTGG

MA0497.1_MEF2C/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCCTATTCTT-----
TTCTATTTTTAGNNN

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCCTATTCTT-----
GACCACATTCATACAAT

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCCTATTCTT
AAGATATCCTT

MA0052.2_MEF2A/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCCTATTCTT----
NNGCTATTTTTAGCN

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCCTATTCTT--
TNNTTTCGTATTNNANN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCTATTCTT---
-KCTATTTTTRGH

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCCTATTCTT------
--ACATTCATGACACG

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TCCTATTCTT-------
TNNANNTCTATTGTTNTNNANN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCCTATTCTT
-GCTAATCC-