Information for motif3


Reverse Opposite:

p-value:1e-27
log p-value:-6.227e+01
Information Content per bp:1.721
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets356.6 +/- 298.1bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGATATATTCCA-
ANNNGGATATATCCNNN

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGATATATTCCA
-----TTTTCCA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGATATATTCCA--
----ATTTTCCATT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGATATATTCCA--
----GCATTCCAGN

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGATATATTCCA--
----RCATTCCWGG

MA0090.1_TEAD1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGATATATTCCA---
---CACATTCCTCCG

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGATATATTCCA
GACAGAGATATCAGTGT

NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AGATATATTCCA---
NTGACTCANTTTTTCCANTN

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGATATATTCCA--
NNNNNBAGATAWYATCTVHN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGATATATTCCA----
GGCAAAAGTCCAATAA