Information for motif35


Reverse Opposite:

p-value:1e-8
log p-value:-1.960e+01
Information Content per bp:1.860
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets351.6 +/- 185.4bp
Average Position of motif in Background795.8 +/- 472.4bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)2.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RTGATGGTTC--
ATGATKGATGRC

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------RTGATGGTTC-
NNNNNATTGATGNGTGN

PB0142.1_Jundm2_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RTGATGGTTC-----
ATTGATGAGTCACCAA

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RTGATGGTTC
-TGTCGGTT-

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RTGATGGTTC-
-TGCTGAGTCA

MA0491.1_JUND/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RTGATGGTTC---
--NATGAGTCACN

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---RTGATGGTTC---
NNANTGATTGATNTTN

MA0478.1_FOSL2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RTGATGGTTC--
-GGATGACTCAT

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RTGATGGTTC-
TTTGATTGATGN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RTGATGGTTC------
-AGATGCTRCTRCCHT