Information for motif42


Reverse Opposite:

p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets677.0 +/- 487.3bp
Average Position of motif in Background1071.8 +/- 564.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCGCACTT--
-NCCACTTAN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCGCACTT--
AAGCACTTAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCACTT----
NNNNTGAGCACTGTNNG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCGCACTT--
AASCACTCAA

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCACTT--
ANCGCGCGCCCTTNN

MA0131.1_HINFP/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCGCACTT--
GCGGACGTTN

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCGCACTT---
-RSCACTYRAG

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCACTT--
NTCGCGCGCCTTNNN

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCGCACTT----
CAGATGTGCACATACGT

PB0095.1_Zfp161_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GCGCACTT--
TGGCGCGCGCGCCTGA