Information for motif47


Reverse Opposite:

p-value:1e-4
log p-value:-1.128e+01
Information Content per bp:1.717
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif23.6
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets466.4 +/- 342.7bp
Average Position of motif in Background736.6 +/- 532.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GTAAGACG
GGTAAGTA-----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTAAGACG
CAGGTAAGTAT

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTAAGACG
AGGTGHCAGACA

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTAAGACG------
GAATGACGAATAAC

PB0027.1_Gmeb1_1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTAAGACG-------
NNNTNGTACGTAANNNN

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GTAAGACG-
---TGACGT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGACG-
AGGTGNCAGACAG

MA0504.1_NR2C2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GTAAGACG---
AGGGGTCAGAGGTCA

PB0094.1_Zfp128_1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GTAAGACG----
TTNGGGTACGCCNNANN

PB0131.1_Gmeb1_2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTAAGACG-------
TGGGCGACGTCGTTAA