Information for motif48


Reverse Opposite:

p-value:1e-3
log p-value:-8.580e+00
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets502.7 +/- 375.8bp
Average Position of motif in Background559.7 +/- 434.1bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)3.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTCTCCGCACG
SCTGTCARCACC

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTCTCCGCACG----
NNTTTGCACACGGCCC

POL001.1_MTE/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCTCTCCGCACG---
NCGACCGCTCCGCTCGAAA

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCTCCGCACG---
CCACACAGCAGGAGA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CCTCTCCGCACG---
-------GCACGTNC

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTCCGCACG---
CCACACAGCAGGAGA

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CCTCTCCGCACG--
------BGCACGTA

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:CCTCTCCGCACG-----
-------GCACGTACCC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CCTCTCCGCACG---
-----TBGCACGCAA

MA0595.1_SREBF1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTCTCCGCACG
-ATCACCCCAC-