Information for motif1


Reverse Opposite:

p-value:1e-83
log p-value:-1.929e+02
Information Content per bp:1.518
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets462.2 +/- 393.0bp
Average Position of motif in Background378.5 +/- 310.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GTGGGGACTTAT
-TGGGGA-----

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGGGGACTTAT----
AGAGGGGATTAATTTAT

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGGACTTAT
CSTGGGAAAD---

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTGGGGACTTAT
NNTGTGGATTSS-

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGGGGACTTAT
-TGTGGATTNNN

MA0130.1_ZNF354C/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTGGGGACTTAT
GTGGAT------

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTGGGGACTTAT----
TGTAGGGATTAATTGTC

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GTGGGGACTTAT
GTATTGGGTGGGTAATT--

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTGGGGACTTAT----
TGAAGGGATTAATCATC

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GTGGGGACTTAT
ANTNCCGGGGGGAANTT-