Information for motif11


Reverse Opposite:

p-value:1e-41
log p-value:-9.657e+01
Information Content per bp:1.820
Number of Target Sequences with motif270.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets508.5 +/- 450.6bp
Average Position of motif in Background468.3 +/- 346.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CACGTTTCTG
GCACGTACCC-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CACGTTTCTG
GCACGTNC---

MA0004.1_Arnt/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACGTTTCTG
CACGTG----

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACGTTTCTG
CACGTGDC--

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CACGTTTCTG
BGCACGTA----

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACGTTTCTG
CACGTGNC--

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CACGTTTCTG-
NNGCACCTTTCTCC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACGTTTCTG
KCACGTGMCN-

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGTTTCTG
NCCACGTG----

Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGTTTCTG
ACCACGTGGTNN