Information for motif17


Reverse Opposite:

p-value:1e-36
log p-value:-8.464e+01
Information Content per bp:1.804
Number of Target Sequences with motif199.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets440.4 +/- 410.7bp
Average Position of motif in Background881.5 +/- 384.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGTCWCTCTA
NCTGTCAATCAN

MA0067.1_Pax2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTCWCTCTA
AGTCACGC--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTCWCTCTA-
-RSCACTYRAG

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTCWCTCTA-
-ATCACCCCAT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTCWCTCTA
GSCTGTCACTCA-

MA0498.1_Meis1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTCWCTCTA--
AGCTGTCACTCACCT

MA0595.1_SREBF1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGTCWCTCTA-
-ATCACCCCAC

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGTCWCTCTA
AASCACTCAA

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGTCWCTCTA-
CNGTCACGCCAC

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTCWCTCTA-
AGCCACTCAAG