Information for motif18


Reverse Opposite:

p-value:1e-36
log p-value:-8.457e+01
Information Content per bp:1.530
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets428.4 +/- 402.9bp
Average Position of motif in Background355.0 +/- 250.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCCACGCA-
NNTAATCCNGNCNN

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCACGCA
NNNAATTAATCCCCNCN

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCACGCA-
ATAGTTAATCCCCCNNA

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCACGCA
NANANTTAATCCCNNNN

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCACGCA-
NTTGTTAATCCCTCTNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTAATCCACGCA
GCTAATCC-----

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCACGCA
GNNNATTAATCCCTNCN

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCACGCA
GANNATTAATCCCTNNN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:TTAATCCACGCA
------CACGCA

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCACGCA-
NTAGTTAATCCCCTTAN