Information for motif2


Reverse Opposite:

p-value:1e-73
log p-value:-1.698e+02
Information Content per bp:1.617
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets441.1 +/- 409.7bp
Average Position of motif in Background362.4 +/- 195.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AACGTTGACCAG-----
GANGTTAACTAGTTTNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AACGTTGACCAG
-----TGACCT-

MA0017.1_NR2F1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AACGTTGACCAG
TGACCTTTGAACCT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AACGTTGACCAG-----
-NNNNTGACCCGGCGCG

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AACGTTGACCAG----
ANATTTTACGAGNNNN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AACGTTGACCAG
TGACCTTGACCT-

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AACGTTGACCAG----
NAATTTTACGAGNTNN

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AACGTTGACCAG---
-----TGACCTTGAT

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AACGTTGACCAG-----
-NNCNTGACCCCGCTCT

PB0131.1_Gmeb1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----AACGTTGACCAG
TNAACGACGTCGNCCA-