Information for motif29


Reverse Opposite:

p-value:1e-32
log p-value:-7.522e+01
Information Content per bp:1.772
Number of Target Sequences with motif126.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets442.6 +/- 401.2bp
Average Position of motif in Background662.5 +/- 614.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0197.1_Zfp105_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAAAGTCGG
ATGGTTCAATAATTTTG

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCAAAAAGTCGG
--ACAAAG----

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TCAAAAAGTCGG
TACTGGAAAAAAAA--

CHR/Cell-Cycle-Exp/Homer

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAAAGTCGG
CGGTTTCAAA-------

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCAAAAAGTCGG
GTCATAAAAN---

MA0095.2_YY1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCAAAAAGTCGG-
-CAAGATGGCGGC

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCAAAAAGTCGG-
-CAAGATGGCGGC

MA0598.1_EHF/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TCAAAAAGTCGG
-CAGGAAGG---

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TCAAAAAGTCGG
TATAGATCAAAGGAAAA-

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCAAAAAGTCGG
ANGNAAAGGTCA-