Information for motif3


Reverse Opposite:

p-value:1e-70
log p-value:-1.619e+02
Information Content per bp:1.958
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets447.0 +/- 441.2bp
Average Position of motif in Background615.0 +/- 270.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTTATTGTG
-CTCATTGTC

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCTTATTGTG----
NNNCCATTGTGTNAN

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTTATTGTG------
CNNNTATTGTTCNNNNN

MA0083.2_SRF/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTTATTGTG-----
TTNCCTTATTTGGNCATN

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCTTATTGTG----
TGTTCCCATTGTGTACT

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTTATTGTG------
AATCAATTGTTCCGCTA

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTTATTGTG-----
ANNTCTATTGTTCNNNA

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCTTATTGTG---
GCAACCTCATTATNNNN

MA0109.1_Hltf/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTTATTGTG
AACCTTATAT--

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCTTATTGTG------
--TAATTGTTCTAAAC